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Number of items: 88.

Boussebayle, Adrien and Torka, Daniel and Ollivaud, Sandra and Braun, Johannes and Bofill-Bosch, Cristina and Dombrowski, Max and Groher, Florian and Hamacher, Kay and Suess, Beatrix (2019):
Next-level riboswitch development-implementation of Capture-SELEX facilitates identification of a new synthetic riboswitch.
In: Nucleic acids research, pp. 4883-4895, 47, (9), ISSN 1362-4962,
DOI: 10.1093/nar/gkz216,
[Article]

Groher, Ann-Christin and Jager, Sven and Schneider, Christopher and Groher, Florian and Hamacher, Kay and Suess, Beatrix (2019):
Tuning the Performance of Synthetic Riboswitches using Machine Learning.
In: ACS Synthetic Biology, pp. 34-44, 8, (1), ISSN 2161-5063,
DOI: 10.1021/acssynbio.8b00207,
[Online-Edition: https://doi.org/10.1021/acssynbio.8b00207],
[Article]

Schmidt, Michael and Hamacher, Kay (2018):
hoDCA: higher order direct-coupling analysis.
In: BMC bioinformatics, p. 546, 19, (1), ISSN 1471-2105,
[Article]

Marini, Carla and Porro, Alessandro and Rastetter, Agnès and Dalle, Carine and Rivolta, Ilaria and Bauer, Daniel and Oegema, Renske and Nava, Caroline and Parrini, Elena and Mei, Davide and Mercer, Catherine and Dhamija, Radhika and Chambers, Chelsea and Coubes, Christine and Thévenon, Julien and Kuentz, Paul and Julia, Sophie and Pasquier, Laurent and Dubourg, Christèle and Carré, Wilfrid and Rosati, Anna and Melani, Federico and Pisano, Tiziana and Giardino, Maria and Innes, A Micheil and Alembik, Yves and Scheidecker, Sophie and Santos, Manuela and Figueiroa, Sonia and Garrido, Cristina and Fusco, Carlo and Frattini, Daniele and Spagnoli, Carlotta and Binda, Anna and Granata, Tiziana and Ragona, Francesca and Freri, Elena and Franceschetti, Silvana and Canafoglia, Laura and Castellotti, Barbara and Gellera, Cinzia and Milanesi, Raffaella and Mancardi, Maria Margherita and Clark, Damien R. and Kok, Fernando and Helbig, Katherine L. and Ichikawa, Shoji and Sadler, Laurie and Neupauerová, Jana and Laššuthova, Petra and Šterbová, Katalin and Laridon, Annick and Brilstra, Eva and Koeleman, Bobby and Lemke, Johannes R. and Zara, Federico and Striano, Pasquale and Soblet, Julie and Smits, Guillaume and Deconinck, Nicolas and Barbuti, Andrea and DiFrancesco, Dario and LeGuern, Eric and Guerrini, Renzo and Santoro, Bina and Hamacher, Kay and Thiel, Gerhard and Moroni, Anna and DiFrancesco, Jacopo C. and Depienne, Christel (2018):
HCN1 mutation spectrum: from neonatal epileptic encephalopathy to benign generalized epilepsy and beyond.
In: Brain : a journal of neurology, pp. 3160-3178, 141, (11), ISSN 1460-2156,
[Article]

Kunzmann, Patrick and Hamacher, Kay (2018):
Biotite: a unifying open source computational biology framework in Python.
In: BMC bioinformatics, p. 346, 19, (1), ISSN 1471-2105,
[Article]

Groß, Christine and Saponaro, Andrea and Santoro, Bina and Moroni, Anna and Thiel, Gerhard and Hamacher, Kay (2018):
Mechanical transduction of cytoplasmic-to-transmembrane-domain movements in a hyperpolarization-activated cyclic nucleotide-gated cation channel.
In: The Journal of biological chemistry, pp. 12908-12918, 293, (33), ISSN 1083-351X,
DOI: 10.1074/jbc.RA118.002139,
[Article]

Dombrowsky, Maximilian J. and Jager, Sven and Schiller, Benjamin and Mayer, Benjamin E. and Stammler, Sebastian and Hamacher, Kay (2018):
StreaMD: Advanced analysis of molecular dynamics using R.
In: Journal of computational chemistry, pp. 1666-1674, 39, (21), ISSN 1096-987X,
[Article]

Tkachenko, Oleksandr and Weinert, Christian and Schneider, Thomas and Hamacher, Kay (2018):
Large-Scale Privacy-Preserving Statistical Computations for Distributed Genome-Wide Association Studies.
In: 13. ACM Asia Conference on Information, Computer and Communications Security (ASIACCS'18), ACM, DOI: 10.1145/3196494.3196541,
[Online-Edition: https://encrypto.de/papers/TWSH18.pdf],
[Conference or Workshop Item]

Groher, Florian and Bofill-Bosch, Cristina and Schneider, Christopher and Braun, Johannes and Jager, Sven and Geißler, Katharina and Hamacher, Kay and Suess, Beatrix (2018):
Riboswitching with ciprofloxacin-development and characterization of a novel RNA regulator.
In: Nucleic acids research, pp. 2121-2132, 46, (4), ISSN 1362-4962,
[Article]

Schmidt, M. and Hamacher, Kay (2017):
Three-body interactions improve contact prediction within direct-coupling analysis.
In: Physical Review E, pp. 10.1103/PhysRevE, 96, (5), ISSN 1063-651X,
[Article]

Demmler, Daniel and Hamacher, Kay and Schneider, Thomas and Stammler, Sebastian (2017):
Privacy-Preserving Whole-Genome Variant Queries.
In: 16. International Conference on Cryptology And Network Security (CANS'17), Springer, [Online-Edition: https://encrypto.de/papers/DHSS17.pdf],
[Conference or Workshop Item]

Keul, Frank and Hess, Martin and Goesele, Michael and Hamacher, Kay (2017):
PFASUM: a substitution matrix from Pfam structural alignments.
In: BMC Bioinformatics, Biomed Central, 18, (1), ISSN 1471-2105,
[Online-Edition: http://doi.org/10.1186/s12859-017-1703-z],
[Article]

Weißgraeber, Stephanie and Saponaro, Andrea and Thiel, Gerhard and Hamacher, Kay (2017):
A reduced mechanical model for cAMP-modulated gating in HCN channels.
In: Scientific reports, p. 40168, 7, ISSN 2045-2322,
[Article]

Groß, Christine and Hamacher, Kay and Schmitz, Katja and Jager, Sven (2017):
Cleavage Product Accumulation Decreases the Activity of Cutinase during PET Hydrolysis.
In: Journal of chemical information and modeling, pp. 243-255, 57, (2), ISSN 1549-960X,
[Article]

Jager, Sven and Schiller, Benjamin and Babel, Philipp and Blumenroth, Malte and Strufe, Thorsten and Hamacher, Kay (2017):
StreAM-Tg : algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs.
In: Algorithms for Molecular Biology, Biomed Central, 12, (1), ISSN 1748-7188,
DOI: 10.1186/s13015-017-0105-0,
[Online-Edition: http://tuprints.ulb.tu-darmstadt.de/6794],
[Article]

Jager, Sven and Schiller, Benjamin and Babel, Philipp and Blumenroth, Malte and Strufe, Thorsten and Hamacher, Kay (2017):
StreAM-Tg: algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs.
In: Algorithms for molecular biology : AMB, p. 15, 12, ISSN 1748-7188,
[Article]

Hess, Martin and Keul, Frank and Goesele, Michael and Hamacher, Kay (2016):
Addressing inaccuracies in BLOSUM computation improves homology search performance.
In: BMC Bioinformatics, BioMed Central, p. 189, 17, (1), ISSN 1471-2105,
[Online-Edition: https://bmcbioinformatics.biomedcentral.com/articles/10.1186...],
[Article]

Bensinger, Dennis and Neumann, Theresa and Scholz, Christoph and Voss, Constantin and Knorr, Sabine and Kuckelkorn, Ulrike and Hamacher, Kay and Kloetzel, Peter-Michael and Schmidt, Boris (2016):
Elastase-like Activity Is Dominant to Chymotrypsin-like Activity in 20S Proteasome's β5 Catalytic Subunit.
In: ACS chemical biology, pp. 1800-1804, 11, (7), ISSN 1554-8937,
[Article]

Greiner, Timo and Bolduan, Sebastian and Hertel, Brigitte and Groß, Christine and Hamacher, Kay and Schubert, Ulrich and Moroni, Anna and Thiel, Gerhard (2016):
Ion Channel Activity of Vpu Proteins Is Conserved throughout Evolution of HIV-1 and SIV.
In: Viruses, p. 325, 8, (12), ISSN 1999-4915,
[Article]

Buß, O. and Jager, S. and Dold, S.-M. and Zimmermann, S. and Hamacher, Kay and Schmitz, K. and Rudat, J. (2016):
Statistical Evaluation of HTS Assays for Enzymatic Hydrolysis of β-Keto Esters.
In: PloS one, pp. e0146104, 11, (1), ISSN 1932-6203,
[Article]

Hess, Martin and Jente, Daniel and Wiemeyer, Josef and Hamacher, Kay and Goesele, Michael (2016):
Visual Analysis and Comparison of Multiple Sequence Alignments.
In: 6th Eurographics Workshop on Visual Computing for Biology and Medicine, [Online-Edition: https://diglib.eg.org/handle/10.2312/vcbm20161268],
[Conference or Workshop Item]

Scholz, Christoph and Knorr, Sabine and Hamacher, Kay and Schmidt, Boris (2015):
DOCKTITE-A Highly Versatile Step-by-Step Workflow for Covalent Docking and Virtual Screening in the Molecular Operating Environment.
In: Journal of chemical information and modeling, pp. 398-406, 55, (2), ISSN 1549-960X,
[Article]

Hoffgaard, Franziska and Kast, S. M. and Moroni, Anna and Thiel, Gerhard and Hamacher, Kay (2015):
Tectonics of a K(+) channel: The importance of the N-terminus for channel gating.
In: Biochimica et biophysica acta, pp. 3197-3204, 1848, (12), ISSN 0006-3002,
[Article]

Karvelas, Nikolaos and Peter, Andreas and Katzenbeisser, Stefan and Tews, Erik and Hamacher, Kay (2014):
Privacy-Preserving Whole Genome Sequence Processing through Proxy-Aided ORAM.
In: Proceedings of the 13th annual {ACM} Workshop on Privacy in the Electronic Society, {WPES} 2014, Scottsdale, AZ, USA, November 2, 2014, Scottsdale, AZ, USA, In: ACM, DOI: 10.1145/2665943.2665962,
[Conference or Workshop Item]

Bose, Ranjan and Thiel, Gerhard and Hamacher, Kay (2014):
Clustering of Giant Virus-DNA Based on Variations in Local Entropy.
In: Viruses, pp. 2259-67, 6, (6), ISSN 1999-4915,
[Article]

Voss, Constantin and Scholz, Christoph and Knorr, Sabine and Beck, Philipp and Stein, Martin L. and Zall, Andrea and Kuckelkorn, Ulrike and Kloetzel, Peter-Michael and Groll, Michael and Hamacher, Kay and Schmidt, Boris (2014):
α-Keto Phenylamides as P1'-Extended Proteasome Inhibitors.
In: ChemMedChem, pp. 2557-2564, 9, (11), ISSN 1860-7187,
[Article]

Hess, Martin and Wiemeyer, Josef and Hamacher, Kay and Goesele, Michael (2014):
Serious Games for Solving Protein Sequence Alignments-Combining Citizen Science and Gaming.
In: International Conference on Serious Games, [Conference or Workshop Item]

Waechter, Michael and Jaeger, Kathrin and Thuerck, Daniel and Weissgraeber, Stephanie and Widmer, Sven and Goesele, Michael and Hamacher, Kay (2014):
Using Graphics Processing Units to Investigate Molecular Coevolution.
In: Concurrency and Computation: Practice and Experience, pp. 1278-1296, 26, (6), [Article]

Lenz, Olav and Keul, Frank and Bremm, Sebastian and Hamacher, Kay and Landesberger, Tatiana von (2014):
Visual Analysis of Patterns in Multiple Amino Acid Mutation Graphs.
IEEE Computer Society, Los Alamitos, Calif., In: IEEE Conference on Visual Analytics Science and Technology. Proceedings, DOI: 10.1109/VAST.2014.7042485,
[Conference or Workshop Item]

Hess, Martin and Bremm, Sebastian and Weissgraeber, Stephanie and Hamacher, Kay and Goesele, Michael and Wiemeyer, Josef and von Landesberger, Tatiana (2014):
Visual exploration of parameter influence on phylogenetic trees.
In: IEEE Computer Graphics and Applications, Special Issue – BioVis, IEEE, pp. 48-56, 34, (2), [Online-Edition: http://ieeexplore.ieee.org/document/6728922/],
[Article]

Hess, Martin and Bremm, Sebastian and Weissgraeber, Stephanie and Hamacher, Kay and Goesele, Michael and Wiemeyer, Josef and von Landesberger, Tatiana (2014):
Visual exploration of parameter influence on phylogenetic trees.
In: IEEE computer graphics and applications, pp. 48-56, 34, (2), ISSN 1558-1756,
[Article]

Franz, M. and Deiseroth, B. and Hamacher, Kay and Jha, Somesh and Katzenbeisser, S. and Schröder, H. (2013):
Secure computations on non-integer values with applications to privacy-preserving sequence analysis.
In: Information Security Technical Report, pp. 117-128, 17, (3), [Article]

Pape, Susanne and Hoffgaard, Franziska and Dür, Mirjam and Hamacher, Kay (2013):
Distance dependency and minimum amino acid alphabets for decoy scoring potentials.
In: Journal of computational chemistry, pp. 10-20, 34, (1), ISSN 1096-987X,
[Article]

Kalabis, Lukas and Waidner, Michael
Anzinger, Heribert and Hamacher, Kay and Katzenbeisser, Stefan (eds.) (2013):
Federated Identity Management.
In: Schutz genetischer, medizinischer und sozialer Daten als multidisziplinäre Aufgabe, Berlin, Springer, pp. 189-218, [Online-Edition: http://dx.doi.org/10.1007/978-3-642-34741-2],
[Book Section]

Ober, M. and Katzenbeisser, S. and Hamacher, Kay (2013):
Structure and Anonymity of the Bitcoin Transaction Graph.
In: Future Internet, pp. 237-250, 5, (2), [Article]

Lauss, Georg and Schroeder, Christina and Dabrock, Peter and Eder, Johann and Hamacher, Kay and Kuhn, Klaus A. and Gottweis, Herbert (2013):
Towards Biobank Privacy Regimes in Responsible Innovation Societies: ESBB Conference in Granada 2012.
In: Biopreservation and Biobanking, pp. 319-323, 11, (5), ISSN 1947-5535,
[Article]

Bose, Ranjan and Hamacher, Kay (2012):
Alternate entropy measure for assessing volatility in financial markets.
In: Physical review. E, Statistical, nonlinear, and soft matter physics, pp. 056112, 86, (5 Pt 2), ISSN 1550-2376,
[Article]

Hamacher, Kay (2012):
Dynamical regimes due to technological change in a microeconomical model of production.
In: Chaos (Woodbury, N.Y.), pp. 033149, 22, (3), ISSN 1089-7682,
[Article]

Waechter, Michael and Jaeger, Kathrin and Weissgraeber, Stephanie and Widmer, Sven and Goesele, Michael and Hamacher, Kay (2012):
Information-Theoretic Analysis of Molecular (Co)Evolution Using Graphics Processing Units.
In: Proceedings of the 3rd International Workshop on Emerging Computational Methods for the Life Sciences, ACM, In: International Workshop on Emerging Computational Methods for the Life Sciences (ECMLS), Delft, Netherlands, 18 June 2012, [Conference or Workshop Item]

Hamacher, Kay and Greiner, Timo and Ogata, Hiroyuki and Van Etten, James L. and Gebhardt, Manuela and Villarreal, Luis P. and Cosentino, Cristian and Moroni, Anna and Thiel, Gerhard (2012):
Phycodnavirus potassium ion channel proteins question the virus molecular piracy hypothesis.
In: PloS one, pp. e38826, 7, (6), ISSN 1932-6203,
[Online-Edition: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjourna...],
[Article]

Hamacher, Kay (2012):
Resilience to leaking - dynamic systems modeling of information security.
In: PloS one, pp. e49804, 7, (12), ISSN 1932-6203,
[Article]

Wulfmeyer, Timo and Polzer, Christian and Hiepler, Gregor and Hamacher, Kay and Shoeman, Robert and Dunigan, David D. and Van Etten, James L. and Lolicato, Marco and Moroni, Anna and Thiel, Gerhard and Meckel, Tobias (2012):
Structural Organization of DNA in Chlorella Viruses.
In: PLoS ONE, pp. e30133, 7, (2), [Online-Edition: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjourna...],
[Article]

Gehrmann, Eva and Gläßer, Christine and Jin, Yaochu and Sendhoff, Bernhard and Drossel, Barbara and Hamacher, Kay (2011):
Robustness of glycolysis in yeast to internal and external noise.
In: Physical Review E, pp. 021913, 1-11, 84, ISSN 1539-3755,
[Online-Edition: http://dx.doi.org/10.1103/PhysRevE.84.021913],
[Article]

Hamacher, Kay (2011):
Efficient quantification of the importance of contacts for the dynamical stability of proteins.
In: Journal of computational chemistry, pp. 810-815, 32, (5), ISSN 1096-987X,
[Article]

Hamacher, Kay (2011):
Free energy of contact formation in proteins: Efficient computation in the elastic network approximation.
In: Physical review. E, Statistical, nonlinear, and soft matter physics, pp. 016703, 84, (1-2), ISSN 1550-2376,
[Article]

Bremm, Sebastian and Landesberger, Tatiana von and Heß, Martin and Schreck, Tobias and Weil, Philipp and Hamacher, Kay (2011):
Interactive Visual Comparison of Multiple Trees.
IEEE Press, New York, In: IEEE Conference on Visual Analytics Science and Technology 2011. Proceedings, DOI: 10.1109/VAST.2011.6102439,
[Conference or Workshop Item]

Bremm, Sebastian and Landesberger von Antburg, Tatiana and Hess, Martin and Schreck, Tobias and Weil, Philipp and Hamacher, Kay (2011):
Interactive Visual Comparison of Multiple Trees.
In: IEEE Visual Analytics Science and Technology, [Article]

Waechter, Michael and Hamacher, Kay and Hoffgaard, Franziska and Widmer, Sven and Goesele, Michael (2011):
Is your permutation algorithm unbiased for n<>2^m?
In: Proceedings of the 9th International Conference on Parallel Processing and Applied Mathematics (PPAM), Springer, In: International Conference on Parallel Processing and Applied Mathematics (PPAM), Torun, Poland, 12-14 Sept. 2011, [Conference or Workshop Item]

Gebhardt, Manuela and Hoffgaard, Franziska and Hamacher, Kay and Kast, S. M. and Moroni, Anna and Thiel, Gerhard (2011):
Membrane Anchoring and Interaction between Transmembrane Domains are Crucial for K+ Channel Function.
In: The Journal of biological chemistry, pp. 11299-306, 286, (13), ISSN 1083-351X,
[Article]

Hamacher, Kay and Katzenbeisser, Stefan (2011):
Public Security: Simulations Need to Replace Conventional Wisdom.
In: New Security Paradigms Workshop (NSPW 2011), ACM Press, pp. 115-124, [Book Section]

Strunk, Timo and Hamacher, Kay and Hoffgaard, Franziska and Engelhardt, Harald and Zillig, Martina Daniela and Faist, Karin and Wenzel, Wolfgang and Pfeifer, Felicitas (2011):
Structural Model of the Gas Vesicle Protein GvpA and Analysis of GvpA Mutants in vivo.
In: Molecular microbiology, pp. 56-68, 81, (1), ISSN 1365-2958,
[Article]

Weißgraeber, Stephanie and Hoffgaard, Franziska and Hamacher, Kay (2011):
Structure-based, biophysical annotation of molecular coevolution of acetylcholinesterase.
In: Proteins, pp. 3144-3154, 79, (11), ISSN 1097-0134,
[Article]

Deiseroth, B. and Franz, M. and Hamacher, Kay and Jha, Somesh and Katzenbeisser, Stefan and Schröder, Heike (2010):
Secure Computations on Real-Valued Signals.
In: IEEE Workshop on Information Forensics and Security (WIFS'10), IEEE Press, [Conference or Workshop Item]

Bremm, Sebastian and Schreck, Tobias and Boba, Patrick and Held, Stephanie and Hamacher, Kay (2010):
Computing and Visually Analyzing Mutual Information in Molecular Co-Evolution.
In: BMC Bioinformatics, p. 330, 11, DOI: 10.1186/1471-2105-11-330,
[Online-Edition: http://www.biomedcentral.com/1471-2105/11/330],
[Article]

Hamacher, Kay
Fred, A. and Filipe, J. and Gamboa, H. (eds.) (2010):
Protein Domain Phylogenies - Information Theory and Evolutionary Dynamics.
In: Proc. of BIOINFORMATICS 2010, pp. 114-122, [Online-Edition: http://www.kay-hamacher.de/PDF/BIOINFORMATICS2010_Phylogeny....],
[Book Section]

Hoffgaard, Franziska and Weil, P. and Hamacher, Kay (2010):
BioPhysConnectoR : Connecting sequence information and biophysical models.
In: BMC Bioinformatics, p. 199, 11, (1), [Online-Edition: http://www.biomedcentral.com/1471-2105/11/199/abstract],
[Article]

Boba, P. and Weil, P. and Hoffgaard, F. and Hamacher, Kay
Fred, A. and Filipe, J. and Gamboa, H. (eds.) (2010):
Co-Evolution in HIV Enzymes.
In: Proc. of BIOINFORMATICS 2010, pp. 39-47, [Online-Edition: http://bioserver.bio.tu-darmstadt.de/HIV/paper_co-evolution_...],
[Book Section]

Reker, D. and Katzenbeisser, S. and Hamacher, Kay (2010):
Computation of mutual information from Hidden Markov Models.
In: Computational biology and chemistry, pp. 328-333, 34, (5-6), ISSN 1476-928X,
[Article]

Pape, Susanne and Hoffgaard, Franziska and Hamacher, Kay (2010):
Distance-dependent classification of amino acids by information theory.
In: Proteins: Structure, Function, and Bioinformatics, pp. 2322-2328, 78, (10), [Online-Edition: http://dx.doi.org/10.1002/prot.22744],
[Article]

Hamacher, Kay (2010):
Efficient perturbation analysis of elastic network models – Application to acetylcholinesterase of T. californica.
In: Journal of Computational Physics, pp. 7309-7316, 229, (19), [Online-Edition: http://dx.doi.org/10.1016/j.jcp.2010.06.015],
[Article]

Deiseroth, B. and Franz, M. and Hamacher, Kay and Jha, Somesh and Katzenbeisser, Stefan and Schröder, Heike (2010):
Secure Computation on Non-Integer Values.
In: 2010 IEEE International Workshop on Information Forensics and Security (WIFS-2010), IEEE Press, ISBN 978-1-4244-9078-3,
[Conference or Workshop Item]

Hamacher, Kay (2010):
Temperature dependence of fluctuations in HIV1-protease.
In: Eur. Biophys. J., pp. 1051-1056, 39, (7), ISSN 1432-1017,
[Online-Edition: http://www.springerlink.com/content/d500277715206011/?p=574e...],
[Article]

Deiseroth, B. and Franz, M. and Hamacher, Kay and Jha, Somesh and Katzenbeisser, Stefan and Schröder, Heike (2010):
Towards Secure Bioinformatics Services.
In: Financial Cryptography and Data Security (FC2011), [Conference or Workshop Item]

Weil, P. and Hoffgaard, Franziska and Hamacher, Kay (2009):
Estimating sufficient statistics in co-evolutionary analysis by mutual information.
In: Computational Biology and Chemistry, pp. 440-444, 33, (6), ISSN 1476-928X,
[Online-Edition: http://dx.doi.org/10.1016/j.compbiolchem.2009.10.003],
[Article]

Ackermann, Jens and Baecher, Paul and Franzel, Thorsten and Goesele, Michael and Hamacher, Kay (2009):
Massively-Parallel Simulation of Biochemical Systems.
In: Proceedings of Massively Parallel Computational Biology on GPUs, In: Jahrestagung der Gesellschaft für Informatik e.V., Lübeck, Germany, September 29, 2009, [Conference or Workshop Item]

Hamacher, Kay (2008):
Coarse-grained molecular models for high-throughput and multi-scale functional investigations.
In: Chem. Cent. J., p. 14, (2), [Online-Edition: http://www.journal.chemistrycentral.com/content/2/S1/S14],
[Article]

Hamacher, Kay
Hansmann, U. H. E. (ed.) (2008):
Coarse-grained molecular models for high-throughput and multi-scale functional investigations.
In: Proceedings of CBSB08 (From computational biophysics to systems biology), pp. 97-100, [Online-Edition: http://www.fz-juelich.de/nic-series/volume40/hamacher.pdf],
[Book Section]

Hamacher, Kay (2008):
Relating sequence evolution of HIV1-Protease to its underlying molecular mechanics.
In: Gene, pp. 30-36, (422), [Online-Edition: http://dx.doi.org/10.1016/j.gene.2008.06.007],
[Article]

Hamacher, Kay (2007):
Adaptive Extremal Optimization by Detrended Fluctuation Analysis.
In: J. Comp. Phys., pp. 1500-1509, 227, (2), ISSN 00219991,
[Online-Edition: http://dx.doi.org/10.1016/j.jcp.2007.09.013],
[Article]

Hamacher, Kay (2007):
Energy landscape paving as a perfect optimization approach under detrended fluctuation analysis.
In: Physica A, pp. 307-314, 378, (2), ISSN 03784371,
[Online-Edition: http://dx.doi.org/10.1016/j.physa.2006.11.071],
[Article]

Hamacher, Kay (2007):
Information Theoretical Measures to Analyze Trajectories in Rational Molecular Design.
In: J. Comp. Chem., pp. 2576-2580, 28, (16), [Online-Edition: http://www3.interscience.wiley.com/cgi-bin/abstract/11425060...],
[Article]

Hamacher, Kay (2006):
Accelerating changes in our epoch and the role of time-horizons.
In: The future of life and the future of our civilization, Springer, pp. 205-215, [Book Section]

Hamacher, Kay (2006):
Adaptation in stochastic tunneling global optimization of complex potential energy landscapes.
In: Europhys. Lett., p. 944, 74, (6), ISSN 0295-5075,
[Online-Edition: http://dx.doi.org/10.1209/epl/i2006-10058-0],
[Article]

Hamacher, Kay and McCammon, J. A. (2006):
Computing the amino acid specifity of fluctuations in biomolecular systems : application to HIV1-protease.
In: J. Chem. Theo. Comp., p. 873, (2), [Online-Edition: http://pubs.acs.org/cgi-bin/abstract.cgi/jctcce/2006/2/i03/a...],
[Article]

Hamacher, Kay and Trylska, J. and McCammon, J. A. (2006):
Dependency map of proteins in the small ribosomal subunit.
In: PLoS Comp. Biol., pp. e10, 2, (2), [Online-Edition: http://dx.doi.org/10.1371/journal.pcbi.0020010],
[Article]

Hamacher, Kay and Hübsch, A. and McCammon, J. A. (2006):
A minimal model for stabilization of biomolecules by hydrocarbon cross-linking.
In: J. Chem. Phys., p. 164907, (124), [Online-Edition: http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=n...],
[Article]

Hamacher, Kay (2005):
Accelerated technological change and the role of time horizons.
In: The Future of Life, Frankfurt / Main, [Conference or Workshop Item]

Gros, C. and Hamacher, Kay and Wenzel, W. (2005):
Breakdown of the Luttinger sum rule at the Mott-Hubbard transition in the one-dimensional t1-t2 Hubbard model.
In: Europhys. Lett., p. 616, 69, (4), ISSN 0295-5075,
[Online-Edition: http://dx.doi.org/10.1209/epl/i2004-10379-x],
[Article]

Hamacher, Kay (2005):
On stochastic global optimization of one-dimensional functions.
In: Physica A, p. 547, 354, ISSN 03784371,
[Online-Edition: http://dx.doi.org/10.1016/j.physa.2005.02.028],
[Article]

Hamacher, Kay and Stolze, J. and Wenzel, W. (2002):
Disorder induced quantum phase transition in random-exchange spin-1/2 chains.
In: Phys. Rev. Lett., p. 127202, 89, [Online-Edition: http://prola.aps.org/abstract/PRL/v89/i12/e127202],
[Article]

Sirker, J. and Klümper, A. and Hamacher, Kay (2002):
Ground-state properties of two-dimensional dimerized Heisenberg models.
In: Phys. Rev. B, p. 134409, 65, (13), ISSN 0163-1829,
[Online-Edition: http://dx.doi.org/10.1103/PhysRevB.65.134409],
[Article]

Hamacher, Kay and Gros, C. and Wenzel, W. (2002):
Interaction-induced collapse of a section of the Fermi sea in the zig-zag Hubbard ladder.
In: Phys. Rev. Lett., p. 217203, 88, (21), [Online-Edition: http://www.kay-hamacher.de/PDF/PRL_Hubbard.pdf],
[Article]

Gros, C. and Valenti, R. and Alvarez, J. V. and Hamacher, Kay and Wenzel, W. (2000):
Test of the frustrated spin-cluster model to describe the low-temperature physics of NaV2O5.
In: Phys. Rev. B. (Rapid Comm.), pp. R14617-R14620, 62, (22), [Online-Edition: http://www.kay-hamacher.de/PDF/PRB_NaV2O5.pdf],
[Article]

Stampfuß, P. and Hamacher, Kay and Wenzel, W. (2000):
A massively parallel configuration-selecting multi-reference configuration interaction implementation.
In: J. Mol. Struc. (THEOCHEM), pp. 99-106, 506, [Online-Edition: http://www.kay-hamacher.de/PDF/Massively_parallel.pdf],
[Article]

Wenzel, W. and Hamacher, Kay
Reguera, D. and Vilar, J. M. G. and Rubi, J. M. (eds.) (1999):
Scaling Laws for Protein Folding.
In: Statistical Mechanics of Biocomplexity, New York, Springer, pp. 62-71, [Book Section]

Hamacher, Kay and Wenzel, W. (1999):
The scaling behavior of stochastic minimization algorithms in a perfect funnel landscape.
In: Phys. Rev. E, pp. 938-941, 59, (1), [Online-Edition: http://prola.aps.org/abstract/PRE/v59/i1/p938_1],
[Article]

Wenzel, W. and Hamacher, Kay (1999):
A stochastic tunneling approach for global minimization.
In: Phys. Rev. Lett., pp. 3003-3007, 82, (15), [Online-Edition: http://prola.aps.org/abstract/PRL/v82/i15/p3003_1],
[Article]

Hamacher, Kay and Wenzel, W. (1998):
Scaling behavior of minimization algorithms in a simple model of protein folding.
In: Proceedings of the HLRZ-Workshop "Monte Carlo Approach to Bioplymers and Protein Folding", Singapore, World Scientific, [Online-Edition: http://www.kay-hamacher.de/PDF/HLRZ_Juelich_97_Prot_Scaling....],
[Book Section]

This list was generated on Tue Oct 15 01:14:21 2019 CEST.