Fuchs, Moritz ; Konstantin, Mirko ; Schrade, Nicolas ; Schweizer, Leonille ; Tolkach, Yuri ; Mukhopadhyay, Anirban (2024)
Sliding Window Optimal Transport for Open World Artifact Detection in Histopathology.
In: IEEE Journal of Biomedical and Health Informatics, 28 (7)
doi: 10.1109/JBHI.2024.3383590
Artikel, Bibliographie

Fuchs, Moritz ; Gonzalez, Camila ; Frisch, Yannik ; Hahn, Paul ; Matthies, Philipp ; Gruening, Maximilian ; Pinto dos Santos, Daniel ; Dratsch, Thomas ; Kim, Moon ; Nensa, Felix ; Trenz, Manuel ; Mukhopadhyay, Anirban (2024)
Closing the loop for AI-ready radiology.
In: RöFo - Fortschritte auf dem Gebiet der Röntgenstrahlen und der bildgebenden Verfahren, (02)
doi: 10.1055/a-2124-1958
Artikel, Bibliographie

Krumb, Henry J. ; Dorweiler, Bernhard ; Mukhopadhyay, Anirban (2023)
HEX: a safe research framework for hybrid EMT X-ray navigation.
In: International Journal of Computer Assisted Radiology and Surgery, 18 (7)
doi: 10.1007/s11548-023-02917-y
Artikel, Bibliographie

Frisch, Yannik ; Fuchs, Moritz ; Mukhopadhyay, Anirban (2023)
Temporally consistent sequence-to-sequence translation of cataract surgeries.
In: International Journal of Computer Assisted Radiology and Surgery, 18 (7)
doi: 10.1007/s11548-023-02925-y
Artikel, Bibliographie

González, Camila ; Ranem, Amin ; Pinto dos Santos, Daniel ; Othman, Ahmed ; Mukhopadhyay, Anirban (2023)
Lifelong nnU-Net: a framework for standardized medical continual learning.
In: Scientific Reports, 13
doi: 10.1038/s41598-023-34484-2
Artikel, Bibliographie

Kalkhof, John ; González, Camila ; Mukhopadhyay, Anirban (2023)
Med-NCA: Robust and Lightweight Segmentation with Neural Cellular Automata.
28th International Conference on Information Processing in Medical Imaging (IPMI 2023). San Carlos de Bariloche, Argentina (18.06.2023-23.06.2023)
doi: 10.1007/978-3-031-34048-2_54
Konferenzveröffentlichung, Bibliographie

Pati, Sarthak ; Thakur, Siddhesh P. ; Hamamcı, İbrahim Ethem ; Baid, Ujjwal ; Baheti, Bhakti ; Bhalerao, Megh ; Güley, Orhun ; Mouchtaris, Sofia ; Lang, David ; Thermos, Spyridon ; Gotkowski, Karol ; González, Camila ; Grenko, Caleb ; Getka, Alexander ; Edwards, Brandon ; Sheller, Micah ; Wu, Junwen ; Karkada, Deepthi ; Panchumarthy, Ravi ; Ahluwalia, Vinayak ; Zou, Chunrui ; Bashyam, Vishnu ; Li, Yuemeng ; Haghighi, Babak ; Chitalia, Rhea ; Abousamra, Shahira ; Kurc, Tahsin M. ; Gastounioti, Aimilia ; Er, Sezgin ; Bergman, Mark ; Saltz, Joel H. ; Fan, Yong ; Shah, Prashant ; Mukhopadhyay, Anirban ; Tsaftaris, Sotirios A. ; Menze, Bjoern ; Davatzikos, Christos ; Kontos, Despina ; Karargyris, Alexandros ; Umeton, Renato ; Mattson, Peter ; Bakas, Spyridon (2023)
GaNDLF: the generally nuanced deep learning framework for scalable end-to-end clinical workflows.
In: Communications Engineering, 2 (1)
doi: 10.1038/s44172-023-00066-3
Artikel, Bibliographie

Tolkach, Yuri ; Wolgast, Lisa Marie ; Damanakis, Alexander ; Pryalukhin, Alexey ; Schallenberg, Simon ; Hulla, Wolfgang ; Eich, Marie-Lisa ; Schroeder, Wolfgang ; Mukhopadhyay, Anirban ; Fuchs, Moritz ; Klein, Sebastian ; Bruns, Christiane ; Büttner, Reinhard ; Gebauer, Florian ; Schömig-Markiefka, Birgid ; Quaas, Alexander (2023)
Artificial intelligence for tumour tissue detection and histological regression grading in oesophageal adenocarcinomas: a retrospective algorithm development and validation study.
In: The Lancet Digital Health, 5 (5)
doi: 10.1016/S2589-7500(23)00027-4
Artikel, Bibliographie

Altmann, Sebastian ; Abello Mercado, Mario A. ; Ucar, Felix A. ; Kronfeld, Andrea ; Al-Nawas, Bilal ; Mukhopadhyay, Anirban ; Booz, Christian ; Brockmann, Marc A. ; Othman, Ahmed E. (2023)
Ultra-High-Resolution CT of the Head and Neck with Deep Learning Reconstruction—Assessment of Image Quality and Radiation Exposure and Intraindividual Comparison with Normal-Resolution CT.
In: Diagnostics, 13 (9)
doi: 10.3390/diagnostics13091534
Artikel, Bibliographie

Griem, Johanna ; Eich, Marie-Lisa ; Schallenberg, Simon ; Pryalukhin, Alexey ; Bychkov, Andrey ; Fukuoka, Junya ; Zayats, Vitaliy ; Hulla, Wolfgang ; Munkhdelger, Jijgee ; Seper, Alexander ; Tsvetkov, Tsvetan ; Mukhopadhyay, Anirban ; Sanner, Antoine ; Stieber, Jonathan ; Fuchs, Moritz ; Babendererde, Niklas ; Schömig-Markiefka, Birgid ; Klein, Sebastian ; Buettner, Reinhard ; Quaas, Alexander ; Tolkach, Yuri (2023)
Artificial Intelligence–Based Tool for Tumor Detection and Quantitative Tissue Analysis in Colorectal Specimens.
In: Modern Pathology, (12)
doi: 10.1016/j.modpat.2023.100327
Artikel, Bibliographie

Kalkhof, John ; Mukhopadhyay, Anirban (2023)
M3D-NCA: Robust 3D Segmentation with Built-In Quality Control.
26th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2023). Vancouver, Canada (08.10.2023 - 12.10.2023)
doi: 10.1007/978-3-031-43898-1_17
Konferenzveröffentlichung, Bibliographie

Galvão da Mata, João Victor ; Krumb, Henry ; Mishra, Utkarsh ; Mukhopadhyay, Anirban ; Essert, Caroline (2023)
MANGO: low-cost open source needle guidance.
In: Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 11 (4)
doi: 10.1080/21681163.2022.2154276
Artikel, Bibliographie

Frisch, Yannik ; Fuchs, Moritz ; Sanner, Antoine ; Ucar, Felix Anton ; Frenzel, Marius ; Wasielica-Poslednik, Joana ; Gericke, Adrian ; Wagner, Felix Mathias ; Dratsch, Thomas ; Mukhopadhyay, Anirban (2023)
Synthesising Rare Cataract Surgery Samples with Guided Diffusion Models.
International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Vancouver (8.10-12.10.2023)
doi: 10.1007/978-3-031-43996-4_34
Konferenzveröffentlichung, Bibliographie

González, Camila ; Gotkowski, Karol ; Fuchs, Moritz ; Bucher, Andreas ; Dadras, Armin ; Fischbach, Ricarda ; Kaltenborn, Isabel Jasmin ; Mukhopadhyay, Anirban (2022)
Distance-based detection of out-of-distribution silent failures for Covid-19 lung lesion segmentation.
In: Medical Image Analysis, 82
doi: 10.1016/j.media.2022.102596
Artikel, Bibliographie

Mehrtens, Hendrik Alexander ; Gonzalez, Camila ; Mukhopadhyay, Anirban (2022)
Improving Robustness and Calibration in Ensembles with Diversity Regularization.
4th DAGM German Conference on Pattern Recognition. Konstanz, Germany (27.09.2022-30.09.2022)
doi: 10.1007/978-3-031-16788-1_3
Konferenzveröffentlichung, Bibliographie

Wagner, Nicolas ; Fuchs, Moritz ; Tolkach, Yuri ; Mukhopadhyay, Anirban (2022)
Federated Stain Normalization for Computational Pathology.
25th International Conference on Medical Image Computing and Computer-Assisted Intervention. Singapore (18.09.2022-22.09.2022)
doi: 10.1007/978-3-031-16434-7_2
Konferenzveröffentlichung, Bibliographie

Kalkhof, John ; Gonzalez, Camila ; Mukhopadhyay, Anirban (2022)
Disentanglement Enables Cross-Domain Hippocampus Segmentation.
19th International Symposium on Biomedical Imaging. Kolkata, India (28.03.2022-31.03.2022)
doi: 10.1109/ISBI52829.2022.9761560
Konferenzveröffentlichung, Bibliographie

González, Camila ; Harder, Christian L. ; Ranem, Amin ; Fischbach, Ricarda ; Kaltenborn, Isabel J. ; Dadras, Armin ; Bucher, Andreas M. ; Mukhopadhyay, Anirban (2022)
Quality Monitoring of Federated Covid-19 Lesion Segmentation.
Bildverarbeitung für die Medizin 2022. Heidelberg, Germany (26.06.2022-28.06.2022)
doi: 10.1007/978-3-658-36932-3_8
Konferenzveröffentlichung, Bibliographie

Ranem, Amin ; Gonzalez, Camila ; Mukhopadhyay, Anirban (2022)
Continual Hippocampus Segmentation with Transformers.
2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition. New Orleans, USA (19.06.2022-24.06.2022)
doi: 10.1109/CVPRW56347.2022.00415
Konferenzveröffentlichung, Bibliographie

González, Camila ; Ranem, Amin ; Othman, Ahmed ; Mukhopadhyay, Anirban (2022)
Task-Agnostic Continual Hippocampus Segmentation for Smooth Population Shifts.
4th MICCAI workshop on Domain Adaptation and Representation Transfer. Singapore (22.09.2022-22.09.2022)
doi: 10.1007/978-3-031-16852-9_11
Konferenzveröffentlichung, Bibliographie

Krumb, Henry ; Das, Dhritimaan ; Chadda, Romol ; Mukhopadhyay, Anirban (2021)
CycleGAN for interpretable online EMT compensation.
In: International Journal of Computer Assisted Radiology and Surgery, 16 (5)
doi: 10.1007/s11548-021-02324-1
Artikel, Bibliographie

Gotkowski, Karol ; Gonzalez, Camila ; Bucher, Andreas ; Mukhopadhyay, Anirban (2021)
M3d-CAM: a PyTorch Library to Generate 3D Attention Maps for Medical Deep Learning.
German Workshop on Medical Image Computing. Regensburg, Germany (07.03.2021-09.03.2021)
doi: 10.1007/978-3-658-33198-6_52
Konferenzveröffentlichung, Bibliographie

Gonzalez, Camila ; Gotkowski, Karol ; Bucher, Andreas ; Fischbach, Ricarda ; Kaltenborn, Isabel ; Mukhopadhyay, Anirban (2021)
Detecting When Pre-trained nnU-Net Models Fail Silently for Covid-19 Lung Lesion Segmentation.
24th International Conference on Medical Image Computing and Computer-Assisted Intervention. Strasbourg, France (27.09.2021-01.10.2021)
doi: 10.1007/978-3-030-87234-2_29
Konferenzveröffentlichung, Bibliographie

Sanner, Antoine ; González, Camila ; Mukhopadhyay, Anirban (2021)
How Reliable Are Out-of-Distribution Generalization Methods for Medical Image Segmentation?
43rd DAGM German Conference on Pattern Recognition (DAGM GCPR 2021). virtual Conference (28.09.2021-01.10.2021)
doi: 10.1007/978-3-030-92659-5_39
Konferenzveröffentlichung, Bibliographie

González, Camila ; Mukhopadhyay, Anirban (2021)
Self-supervised Out-of-distribution Detection for Cardiac CMR Segmentation.
In: Proceedings of Machine Learning Research, 143
Artikel, Bibliographie

Sahu, Manish ; Mukhopadhyay, Anirban ; Zachow, Stefan (2021)
Simulation-to-real domain adaptation with teacher–student learning for endoscopic instrument segmentation.
In: International Journal of Computer Assisted Radiology and Surgery, 16 (5)
doi: 10.1007/s11548-021-02383-4
Artikel, Bibliographie

Fauser, Johannes ; Bohlender, Simon ; Stenin, Igor ; Kristin, Julia ; Klenzner, Thomas ; Schipper, Jörg ; Mukhopadhyay, Anirban (2020)
Retrospective in silico evaluation of optimized preoperative planning for temporal bone surgery.
In: International Journal of Computer Assisted Radiology and Surgery
doi: 10.1007/s11548-020-02270-4
Artikel, Bibliographie

Sahu, Manish ; Strömsdörfer, Ronja ; Mukhopadhyay, Anirban ; Zachow, Stefan (2020)
Endo-Sim2Real: Consistency Learning-Based Domain Adaptation for Instrument Segmentation.
23rd International Conference on Medical Image Computing and Computer Assisted Intervention. virtual Conference (04.10.2020-08.10.2020)
doi: 10.1007/978-3-030-59716-0_75
Konferenzveröffentlichung, Bibliographie

Sahu, Manish ; Szengel, Angelika ; Mukhopadhyay, Anirban ; Zachow, Stefan (2020)
Surgical phase recognition by learning phase transitions.
In: Current Directions in Biomedical Engineering, 6 (1)
doi: 10.1515/cdbme-2020-0037
Artikel, Bibliographie

Kazeminia, Salome ; Baur, Christoph ; Kuijper, Arjan ; Van Ginneken, Bram ; Navab, Nassir ; Albarqouni, Shadi ; Mukhopadhyay, Anirban (2020)
GANs for medical image analysis.
In: Artificial Intelligence in Medicine, 109
doi: 10.1016/j.artmed.2020.101938
Artikel, Bibliographie

Kügler, David ; Sehring, Jannik ; Stefanov, Andrei ; Stenin, Igor ; Kristin, Julia ; Klenzner, Thomas ; Schipper, Jörg ; Mukhopadhyay, Anirban (2020)
i3PosNet: instrument pose estimation from X-ray in temporal bone surgery.
In: International Journal of Computer Assisted Radiology and Surgery, 15 (7)
doi: 10.1007/s11548-020-02157-4
Artikel, Bibliographie

Krumb, Henry ; Hofmann, Sofie ; Kügler, David ; Ghazy, Ahmed ; Dorweiler, Bernhard ; Bredemann, Judith ; Schmitt, Robert ; Sakas, Georgios ; Mukhopadhyay, Anirban (2020)
Leveraging spatial uncertainty for online error compensation in EMT.
In: International Journal of Computer Assisted Radiology and Surgery
doi: 10.1007/s11548-020-02189-w
Artikel, Bibliographie

Kügler, David ; Uecker, Marc ; Kuijper, Arjan ; Mukhopadhyay, Anirban (2020)
AutoSNAP: Automatically Learning Neural Architectures for Instrument Pose Estimation.
23rd International Conference on Medical Image Computing an Computer-Assisted Intervention (MICCAI 2020). virtual Conference (04.10.2020-08.10.2020)
doi: 10.1007/978-3-030-59716-0_36
Konferenzveröffentlichung, Bibliographie

Fauser, Johannes ; Seelecke, Stefan ; Werthschützky, Roland ; Kupnik, Mario ; Mukhopadhyay, Anirban ; Chadda, Romol ; Goergen, Yannik ; Hessinger, Markus ; Motzki, Paul ; Stenin, Igor ; Kristin, Julia ; Klenzner, Thomas ; Schipper, Jörg (2019)
Planning for Flexible Surgical Robots via Bézier Spline Translation.
In: IEEE Robotics and Automation Letters, 4 (4)
doi: 10.1109/LRA.2019.2926221
Artikel, Bibliographie

Al Hajj, Hassan ; Lamard, Mathieu ; Conze, Pierre-Henri ; Roychowdhury, Soumali ; Hu, Xiaowei ; Maršalkaitė, Gabija ; Zisimopoulos, Odysseas ; Dedmari, Muneer Ahmad ; Zhao, Fenqiang ; Prellberg, Jonas ; Sahu, Manish ; Galdran, Adrian ; Araújo, Teresa ; Vo, Duc My ; Panda, Chandan ; Dahiya, Navdeep ; Kondo, Satoshi ; Bian, Zhengbing ; Vahdat, Arash ; Bialopetravičius, Jonas ; Flouty, Evangello ; Qiu, Chenhui ; Dill, Sabrina ; Mukhopadhyay, Anirban ; Costa, Pedro ; Aresta, Guilherme ; Ramamurthy, Senthil ; Lee, Sang-Woong ; Campilho, Aurélio ; Zachow, Stefan ; Xia, Shunren ; Conjeti, Sailesh ; Stoyanov, Danail ; Armaitis, Jogundas ; Heng, Pheng-Ann ; Macready, William G. ; Cochener, Béatrice ; Quellec, Gwenolé (2019)
CATARACTS: Challenge on automatic tool annotation for cataRACT surgery.
In: Medical Image Analysis, 52
doi: 10.1016/j.media.2018.11.008
Artikel, Bibliographie

Abrams, Jesse F. ; Vashishtha, Anand ; Wong, Seth T. ; Nguyen, An ; Mohamed, Azlan ; Wieser, Sebastian ; Kuijper, Arjan ; Wilting, Andreas ; Mukhopadhyay, Anirban (2019)
Habitat-Net: Segmentation of habitat images using deep learning.
In: Ecological Informatics, 51
doi: 10.1016/j.ecoinf.2019.01.009
Artikel, Bibliographie

Kügler, David ; Krumb, Henry ; Bredemann, Judith ; Stenin, Igor ; Kristin, Julia ; Klenzner, Thomas ; Schipper, Jörg ; Schmitt, Robert ; Sakas, Georgios ; Mukhopadhyay, Anirban (2019)
High-precision evaluation of electromagnetic tracking.
In: International Journal of Computer Assisted Radiology and Surgery
doi: 10.1007/s11548-019-01959-5
Artikel, Bibliographie

Fauser, Johannes ; Stenin, Igor ; Kristin, Julia ; Klenzner, Thomas ; Schipper, Jörg ; Mukhopadhyay, Anirban (2019)
Optimizing Clearance of Bézier Spline Trajectories for Minimally-Invasive Surgery.
MICCAI'19 - Medical Image Computing and Computer Assisted Intervention. Shenzhen, China (13.10.2019-17.10.2019)
doi: 10.1007/978-3-030-32254-0_3
Konferenzveröffentlichung, Bibliographie

Fauser, Johannes ; Fuchs, Moritz ; Ghazy, Ahmed ; Dorweiler, Bernhard ; Mukhopadhyay, Anirban (2019)
Preoperative Planning for Guidewires Employing Shape-Regularized Segmentation and Optimized Trajectories.
MLCN'19 - International Workshop on Machine Learning in Clinical Neuroimaging. Shenzhen, China (17.10.2019-17.10.2019)
doi: 10.1007/978-3-030-32695-1_2
Konferenzveröffentlichung, Bibliographie

Mukhopadhyay, Anirban ; Kügler, David ; Bucher, Andreas ; Fellner, Dieter W. ; Vogl, Thomas J. (2019)
Putting Trust First in the Translation of AI for Healthcare.
In: Ercim News
Artikel, Bibliographie

Fauser, Johannes ; Stenin, Igor ; Bauer, Markus ; Hsu, Wei-Hung ; Kristin, Julia ; Klenzner, Thomas ; Schipper, Jörg ; Mukhopadhyay, Anirban (2019)
Toward an automatic preoperative pipeline for image-guided temporal bone surgery.
In: International Journal of Computer Assisted Radiology and Surgery, 14 (6)
doi: 10.1007/s11548-019-01937-x
Artikel, Bibliographie

Kügler, David ; Distergoft, Alexander ; Kuijper, Arjan ; Mukhopadhyay, Anirban (2018)
Exploring Adversarial Examples.
International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI). Granada, Spain (16.09.2018-20.09.2018)
doi: 10.1007/978-3-030-02628-8_8
Konferenzveröffentlichung, Bibliographie

Fauser, Johannes ; Stenin, Igor ; Kristin, Julia ; Klenzner, Thomas ; Schipper, Jörg ; Fellner, Dieter ; Mukhopadhyay, Anirban (2018)
Generalized Trajectory Planning for Nonlinear Interventions.
International Workshop on OR 2.0 Context-Aware Operating Theaters (OR 2.0). Granada, Spain (16.09.2018-20.09.2018)
doi: 10.1007/978-3-030-01201-4_6
Konferenzveröffentlichung, Bibliographie

Kügler, David ; Jastrzebski, Martin Andrade ; Mukhopadhyay, Anirban (2018)
Instrument Pose Estimation Using Registration for Otobasis Surgery.
International Workshop on Biomedical Image Registration (WBIR). Leiden, The Netherlands (28.06.2018-29.06.2018)
doi: 10.1007/978-3-319-92258-4_10
Konferenzveröffentlichung, Bibliographie

Fauser, Johannes ; Sakas, Georgios ; Mukhopadhyay, Anirban (2018)
Planning nonlinear access paths for temporal bone surgery.
In: International Journal of Computer Assisted Radiology and Surgery, 13 (5)
doi: 10.1007/s11548-018-1712-z
Artikel, Bibliographie

Tycowicz, Christoph von ; Ambellan, Felix ; Mukhopadhyay, Anirban ; Zachow, Stefan (2018)
An efficient Riemannian statistical shape model using differential coordinates.
In: Medical Image Analysis, 43
doi: 10.1016/j.media.2017.09.004
Artikel, Bibliographie

Oksuz, Ilkay ; Mukhopadhyay, Anirban ; Dharmakumar, Rohan ; Tsaftaris, Sotirios A. (2017)
Unsupervised Myocardial Segmentation for Cardiac BOLD.
In: IEEE Transactions on Medical Imaging, 36 (11)
doi: 10.1109/TMI.2017.2726112
Artikel, Bibliographie