Geng, Jiahui ; Cai, Fengyu ; Wang, Yuxia ; Koeppl, Heinz ; Nakov, Preslav ; Gurevych, Iryna (2024)
A Survey of Confidence Estimation and Calibration in Large Language Models.
2024 Conference of the North American Chapter of the Association for Computational Linguistics. Mexico City, Mexico (17-21.06.2024)
Konferenzveröffentlichung, Bibliographie

Benenson, Yaakov ; Dalchau, Neil ; Koeppl, Heinz ; Maler, Oded (2024)
Formal Methods for the Synthesis of Biomolecular Circuits.
In: Dagstuhl Reports, 2018, 8 (2)
doi: 10.26083/tuprints-00026921
Artikel, Zweitveröffentlichung, Verlagsversion

Danos, Vincent ; Koeppl, Heinz (2024)
Self-assembly and Self-organization in Computer Science and Biology.
In: Dagstuhl Reports, 2016, 5 (9)
doi: 10.26083/tuprints-00026922
Artikel, Zweitveröffentlichung, Verlagsversion

Cui, Kai ; Dayanikli, Gökce ; Laurière, Mathieu ; Geist, Matthieu ; Pietquin, Oliver ; Koeppl, Heinz (2024)
Learning Discrete-Time Major-Minor Mean Field Games.
38th AAAI Conference on Artificial Intelligence. Vancouver, Canada (20.02.2024 - 27.02.2024)
doi: 10.1609/aaai.v38i9.28818
Konferenzveröffentlichung, Bibliographie

Kramat, Janice ; Kraus, Leon ; Gunawan, Vincent J. ; Smyej, Elias ; Froehlich, Philipp ; Weber, Tim E. ; Spiehl, Dieter ; Koeppl, Heinz ; Blaeser, Andreas ; Suess, Beatrix (2024)
Sensing levofloxacin with an RNA aptamer as a bioreceptor.
In: Biosensors, 14 (1)
doi: 10.3390/bios14010056
Artikel, Bibliographie

Vockenhuber, Michael-Paul ; Hoetzel, Janis ; Maurer, Lisa-Marie ; Fröhlich, Philipp ; Weiler, Sigrid ; Muller, Yves A. ; Koeppl, Heinz ; Suess, Beatrix (2024)
A novel RNA aptamer as synthetic inducer of DasR controlled transcription.
In: ACS synthetic biology, 13 (1)
doi: 10.1021/acssynbio.3c00553
Artikel, Bibliographie

Adamy, Jürgen ; Nuber, Ulrike A. ; Koeppl, Heinz ; Bretthauer, Georg (2024)
Biological engineering – an engineering discipline crucial to the future of our civilization.
In: at - Automatisierungstechnik, 72 (7)
doi: 10.1515/auto-2024-0061
Artikel, Bibliographie

Reich, Christoph ; Prangemeier, Tim ; Koeppl, Heinz (2023)
The TYC Dataset for Understanding Instance-Level Semantics and Motions of Cells in Microstructures.
International Conference on Computer Vision (ICCV 2023). Paris, France (02.-06.10.2023)
doi: 10.1109/ICCVW60793.2023.00426
Konferenzveröffentlichung, Bibliographie

Cui, Kai ; Baumgärtner, Lars ; Yilmaz, Mustafa Burak ; Li, Mengguang ; Fabian, Christian ; Becker, Benjamin ; Xiang, Lin ; Bauer, Maximilian ; Koeppl, Heinz (2023)
UAV Swarms for Joint Data Ferrying and Dynamic Cell Coverage via Optimal Transport Descent and Quadratic Assignment.
48th Conference on Local Computer Networks. Daytona Beach, USA (02.10.2023 - 05.10.2023)
doi: 10.1109/LCN58197.2023.10223388
Konferenzveröffentlichung, Bibliographie

Weil, Jannis ; Alkhalili, Yassin ; Tahir, Anam ; Gruczyk, Thomas ; Meuser, Tobias ; Mu, Mu ; Koeppl, Heinz ; Mauthe, Andreas (2023)
Modeling Quality of Experience for Compressed Point Cloud Sequences based on a Subjective Study.
15th International Conference on Quality of Multimedia Experience. Ghent, Belgium (20.06. - 22.06.2023)
doi: 10.1109/QoMEX58391.2023.10178579
Konferenzveröffentlichung, Bibliographie

Tahir, Anam ; Alt, Bastian ; Rizk, Amr ; Koeppl, Heinz (2023)
Load Balancing in Compute Clusters with Delayed Feedback.
In: IEEE Transactions on Computers, 72 (6)
doi: 10.1109/TC.2022.3215907
Artikel, Bibliographie

Engelmann, Nicolai ; Schwarz, Tobias ; Kubaczka, Erik ; Hochberger, Christian ; Koeppl, Heinz (2023)
Context-Aware Technology Mapping in Genetic Design Automation.
In: ACS Synthetic Biology, 12 (2)
doi: 10.1021/acssynbio.2c00361
Artikel, Bibliographie

Fabian, Christian ; Cui, Kai ; Koeppl, Heinz
Hrsg.: Ruiz, Francisco ; Dy, Jennifer ; van de Meent, Jan-Willem (2023)
Learning Sparse Graphon Mean Field Games.
26th International Conference on Artificial Intelligence and Statistics. Valencia, Spain (25.04.2023 - 27.04.2023)
Konferenzveröffentlichung, Bibliographie

Cetin, Ozdemir ; Chen, Mingzhi ; Ziegler, Paul ; Wild, Peter ; Koeppl, Heinz (2022)
Deep learning-based restaining of histopathological images.
International Conference on Bioinformatics and Biomedicine (BIBM 2022). Las Vegas, USA (06.-08.12.2022)
doi: 10.1109/BIBM55620.2022.9994934
Konferenzveröffentlichung, Bibliographie

Cui, Kai ; KhudaBukhsh, Wasiur R. ; Koeppl, Heinz (2022)
Hypergraphon mean field games.
In: Chaos: An Interdisciplinary Journal of Nonlinear Science, 32 (11)
doi: 10.1063/5.0093758
Artikel, Bibliographie

Engelmann, Nicolai ; Koeppl, Heinz (2022)
Forward-Backward Latent State Inference for Hidden Continuous-Time semi-Markov Chains.
36th Conference on Neural Information Processing Systems (NeurIPS 2022). New Orleans, USA (28.11.-09.12.2022)
Konferenzveröffentlichung, Bibliographie

Schultheis, Matthias ; Rothkopf, Constantin A. ; Koeppl, Heinz (2022)
Reinforcement Learning with Non-Exponential Discounting.
36th Conference on Neural Information Processing Systems (NeurIPS 2022). New Orleans, USA (28.11.-09.12.2022)
Konferenzveröffentlichung, Bibliographie

Weber, Wadim ; Roeder, Markus ; Probanowski, Tobias ; Yang, Jie ; Abujubara, Helal ; Koeppl, Heinz ; Tietze, Alesia ; Stein, Viktor (2022)
Functional Nanopore Screen: A Versatile High-Throughput Assay to Study and Engineer Protein Nanopores in Escherichia coli.
In: ACS synthetic biology, 11 (6)
doi: 10.1021/acssynbio.1c00635
Artikel, Bibliographie

Cui, Kai ; KhudaBukhsh, Wasiur R. ; Koeppl, Heinz (2022)
Motif-based mean-field approximation of interacting particles on clustered networks.
In: Phys. Rev. E, 105
doi: 10.1103/PhysRevE.105.L042301
Artikel, Bibliographie

Jia, Jiekai ; Tahir, Anam ; Koeppl, Heinz (2022)
Decentralized Coordination in Partially Observable Queueing Networks.
GLOBECOM 2022 - 2022 IEEE Global Communications Conference. Rio de Janeiro (04.-08.12.2022)
doi: 10.1109/GLOBECOM48099.2022.10001584
Konferenzveröffentlichung, Bibliographie

Ourari, Ramzi ; Cui, Kai ; Elshamanhory, Ahmed ; Koeppl, Heinz (2022)
Nearest-Neighbor-based Collision Avoidance for Quadrotors via Reinforcement Learning.
doi: 10.1109/ICRA46639.2022.9812221
Konferenzveröffentlichung, Bibliographie

Köhs, Lukas ; Kukovetz, Kerri ; Rauh, Oliver ; Koeppl, Heinz (2022)
Nonparametric Bayesian inference for meta-stable conformational dynamics.
In: Physical Biology, 19 (5)
doi: 10.1088/1478-3975/ac885e
Artikel, Bibliographie

Kar, Sounak ; Rehrmann, Robin ; Mukhopadhyay, Arpan ; Alt, Bastian ; Ciucu, Florin ; Koeppl, Heinz ; Binnig, Carsten ; Rizk, Amr (2022)
On the Throughput Optimization in Large-scale Batch-processing Systems.
In: Performance Evaluation, 2020, 144
doi: 10.26083/tuprints-00021522
Artikel, Zweitveröffentlichung, Postprint

Lehr, François-Xavier ; Kuzembayeva, Alina ; Bailey, Megan E. ; Kleindienst, Werner ; Kabisch, Johannes ; Koeppl, Heinz (2021)
Functionalizing cell-free systems with CRISPR-associated proteins: Application to RNA-based circuit engineering.
In: ACS Synthetic Biology, 10 (9)
doi: 10.1021/acssynbio.0c00386
Artikel, Bibliographie

Alkhalili, Yassin ; Weil, Jannis ; Tahir, Anam ; Meuser, Tobias ; Koldehofe, Boris ; Mauthe, Andreas ; Koeppl, Heinz ; Steinmetz, Ralf (2021)
Towards QoE-Driven Optimization of Multi-Dimensional Content Streaming.
In: Electronic Communications of the EASST, 80
doi: 10.14279/tuj.eceasst.80.1167
Artikel, Bibliographie

Schladt, Tobias ; Engelmann, Nicolai ; Kubaczka, Erik ; Hochberger, Christian ; Koeppl, Heinz (2021)
Automated Design of Robust Genetic Circuits: Structural Variants and Parameter Uncertainty.
doi: 10.1101/2021.08.13.456094
Report, Bibliographie

Cui, Kai ; Koeppl, Heinz (2021)
Approximately Solving Mean Field Games via Entropy-Regularized Deep Reinforcement Learning.
24th International Conference on Artificial Intelligence and Statistics. Virtual Conference (13.-15.04.2021)
Konferenzveröffentlichung, Bibliographie

Kar, Sounak ; Rehrmann, Robin ; Mukhopadhyay, Arpan ; Alt, Bastian ; Ciucu, Florin ; Koeppl, Heinz ; Binnig, Carsten ; Rizk, Amr (2020)
On the Throughput Optimization in Large-Scale Batch-Processing Systems.
38th International Symposium on Computer Performance, Modeling, Measurements and Evaluation (PERF 2020). virtual Conference (02.-06.11.2020)
Konferenzveröffentlichung, Bibliographie

Sinzger, Mark ; Gehri, Maximilian ; Koeppl, Heinz (2020)
Poisson channel with binary Markov input and average sojourn time constraint.
2020 IEEE International Symposium on Information Theory (ISIT'20). virtual Conference (21.-26.06.2020)
doi: 10.1109/ISIT44484.2020.9174360
Konferenzveröffentlichung, Bibliographie

Kuebert, Thomas ; Puder, Henning ; Koeppl, Heinz (2019)
Daily Routine Recognition with Visual Interactive Labeling by Fusing Acceleration and Audio Signals.
19th International Symposium on Signal Processing and Information Technology. Ajman, United Arab Emirates (10.-12.12.2019)
doi: 10.1109/ISSPIT47144.2019.9001791
Konferenzveröffentlichung, Bibliographie

Altintan, Derya ; Koeppl, Heinz (2019)
Hybrid master equation for jump-diffusion approximation of biomolecular reaction networks.
In: BIT Numerical Mathematics, (2)
doi: 10.1007/s10543-019-00781-4
Artikel, Bibliographie

KhudaBukhsh, Wasiur R. ; Auddy, Arnab ; Disser, Yann ; Koeppl, Heinz (2019)
Approximate Lumpability for Markovian Agent-based Models Using Local Symmetries.
In: Jounal of Applied Probability, 56 (3)
doi: 10.1017/jpr.2019.44
Artikel, Bibliographie

Lehr, François-Xavier ; Hanst, Maleen ; Vogel, Marc ; Kremer, Jennifer ; Göringer, H. Ulrich ; Suess, Beatrix ; Koeppl, Heinz (2019)
Cell-free prototyping of AND-logic gates based on heterogeneous RNA activators.
In: ACS Synthetic Biology, 8 (9)
doi: 10.1021/acssynbio.9b00238
Artikel, Bibliographie

Wildner, Christian ; Koeppl, Heinz
Hrsg.: PMLR (2019)
Moment-Based Variational Inference for Markov Jump Processes.
International Conference on Machine Learning. Long Beach, California, USA (June 9-15, 2019)
Konferenzveröffentlichung, Bibliographie

Alt, Bastian ; Ballard, Trevor ; Steinmetz, Ralf ; Koeppl, Heinz ; Rizk, Amr (2019)
CBA: Contextual Quality Adaptation for Adaptive Bitrate Video Streaming.
IEEE Conference on Computer Communications (INFOCOM 2019). Paris, France (29.04.-02.05.)
doi: 10.1109/INFOCOM.2019.8737418
Konferenzveröffentlichung, Bibliographie

Alt, Bastian ; Weckesser, Markus ; Becker, Christian ; Hollick, Matthias ; Kar, Sounak ; Klose, Robin ; Kluge, Roland ; Koeppl, Heinz ; KhudaBukhsh, Wasiur R. ; Luthra, Manisha ; Mousavi, Mahdi ; Mühlhäuser, Max ; Pfannemüller, Martin ; Rizk, Amr ; Schürr, Andy ; Steinmetz, Ralf ; Klein, Anja (2019)
Transitions: A Protocol-Independent View of the Future Internet.
In: Proceedings of the IEEE, 107 (4)
doi: 10.1109/JPROC.2019.2895964
Artikel, Bibliographie

KhudaBukhsh, Wasiur R. ; Rückert, Julius ; Wulfheide, Julian ; Hausheer, David ; Koeppl, Heinz (2018)
A Comprehensive Analysis of Swarming-based Live Streaming to Leverage Client Heterogeneity.
doi: 10.48550/arXiv.1812.11439
Report, Bibliographie

Prangemeier, Tim ; Wildner, C. ; Hanst, M. ; Koeppl, Heinz (2018)
Maximizing information gain for the characterization of biomolecular circuits.
5th ACM International Conference on Nanoscale Computing and Communication (NANOCOM'18). Reykjavik, Iceland (05.-07.09.2018)
doi: 10.1145/3233188.3233217
Konferenzveröffentlichung, Bibliographie

Alt, Bastian ; Messer, Michael ; Roeper, Jochen ; Schneider, Gaby ; Koeppl, Heinz (2018)
Non-Parametric Bayesian Inference for Change Point Detection in Neural Spike Trains.
2018 IEEE Statistical Signal Processing Workshop (SSP 2018). Freiburg im Breisgau, Germany (10.-13.06.)
doi: 10.1109/SSP.2018.8450787
Konferenzveröffentlichung, Bibliographie

KhudaBukhsh, Wasiur R. ; Alt, Bastian ; Kar, Sounak ; Rizk, Amr ; Koeppl, Heinz (2018)
Collaborative Uploading in Heterogeneous Networks: Optimal and Adaptive Strategies.
INFOCOM 2018 - IEEE Conference on Computer Communications. Honolulu, USA (16.-19.04.)
doi: 10.1109/INFOCOM.2018.8486310
Konferenzveröffentlichung, Bibliographie

Hofmann, Anja ; Falk, Johannes ; Prangemeier, Tim ; Happel, Dominic ; Köber, Adrian ; Christmann, Andreas ; Koeppl, Heinz ; Kolmar, Harald (2018)
A tightly regulated and adjustable CRISPR-dCas9 based AND gate in yeast.
In: Nucleic Acids Research, 47 (1)
doi: 10.1093/nar/gky1191
Artikel, Bibliographie

Mousavi, Mahdi ; Shatri, Hussein al- ; KhudaBukhsh, W. R. ; Koeppl, Heinz ; Klein, Anja (2017)
Cross-Layer QoE-based Incentive Mechanism for Video Streaming in Multi-Hop Wireless Networks.
IEEE 86th Vehicular Technology Conference (VTC). Toronto, Canada (24.-27.09.2017)
doi: 10.1109/VTCFall.2017.8288177
Konferenzveröffentlichung, Bibliographie

KhudaBukhsh, Wasiur R. ; Rückert, Julius ; Wulfheide, Julian ; Hausheer, David ; Koeppl, Heinz (2017)
SCHEDMIX: Heterogeneous Strategy Assignment in Swarming-based Live Streaming.
In: IFIP TC6 Open Transactions on Communication Systems (OTCS) (under review)
Artikel, Bibliographie

Richerzhagen, Björn ; Wulfheide, Julian ; Koeppl, Heinz ; Mauthe, Andreas ; Nahrstedt, Klara ; Steinmetz, Ralf (2016)
Enabling Crowdsourced Live Event Coverage with Adaptive Collaborative Upload Strategies.
17th International Symposium on A World of Wireless, Mobile and Multimedia Networks (WoWMoM). Coimbra, Portugal (21.-24.06.20016)
doi: 10.1109/WoWMoM.2016.7523526
Konferenzveröffentlichung, Bibliographie

KhudaBukhsh, Wasiur R. ; Rueckert, Julius ; Wulfheide, Julian ; Hausheer, David ; Koeppl, Heinz (2016)
Analysing and Leveraging Client Heterogeneity in Swarming-based Live Streaming.
2016 IFIP Networking Conference (IFIP Networking) and Workshops. Vienna, Austria (17.-19.05.2016)
doi: 10.1109/IFIPNetworking.2016.7497234
Konferenzveröffentlichung, Bibliographie

Hill, Steven M. ; Heiser, Laura M. ; Cokelaer, Thomas ; Unger, Michael ; Nesser, Nicole K. ; Carlin, Daniel E. ; Zhang, Yang ; Sokolov, Artem ; Paull, Evan O. ; Wong, Chris K. ; Graim, Kiley ; Bivol, Adrian ; Wang, Haizhou ; Zhu, Fan ; Afsari, Bahman ; Danilova, Ludmila V. ; Favorov, Alexander V. ; Lee, Wai Shing ; Taylor, Dane ; Hu, Chenyue W. ; Long, Byron L. ; Noren, David P. ; Bisberg, Alexander J. ; Mills, Gordon B. ; Gray, Joe W. ; Kellen, Michael ; Norman, Thea ; Friend, Stephen ; Qutub, Amina A. ; Fertig, Elana J. ; Guan, Yuanfang ; Song, Mingzhou ; Stuart, Joshua M. ; Spellman, Paul T. ; Koeppl, Heinz ; Stolovitzky, Gustavo ; Saez-Rodriguez, Julio ; Mukherjee, Sach (2016)
Inferring causal molecular networks: empirical assessment through a community-based effort.
In: Nature Methods, 13 (4)
doi: 10.1038/nmeth.3773
Artikel, Bibliographie

Sulaimanov, Nurgazy ; Koeppl, Heinz (2016)
Graph reconstruction using covariance-based methods.
In: EURASIP Journal on Bioinformatics and Systems Biology
doi: 10.1186/s13637-016-0052-y
Artikel, Bibliographie

Petrov, Tatjana ; Koeppl, Heinz (2010)
Maximal reduction of deterministic semantics of rule-based models: Syntax-Independent Setup.
7th International Workshop on Computational Systems Biology. Luxembourg (16.-18.06.2010)
Konferenzveröffentlichung, Bibliographie