Artikel

Kubaczka, Erik ; Gehringer, Maximilian ; Marlhens, Jérémie J. M. ; Schwarz, Tobias ; Molderings, Maik ; Engelmann, Nicolai ; Garcia, Hernan G. ; Hochberger, Christian ; Koeppl, Heinz (2024)
Energy Aware Technology Mapping of Genetic Logic Circuits.
In: ACS Synthetic Biology, 13 (10)
doi: 10.1021/acssynbio.4c00395
Artikel, Bibliographie

Kramat, Janice ; Kraus, Leon ; Gunawan, Vincent J. ; Smyej, Elias ; Froehlich, Philipp ; Weber, Tim E. ; Spiehl, Dieter ; Koeppl, Heinz ; Blaeser, Andreas ; Suess, Beatrix (2024)
Sensing levofloxacin with an RNA aptamer as a bioreceptor.
In: Biosensors, 14 (1)
doi: 10.3390/bios14010056
Artikel, Bibliographie

Vockenhuber, Michael-Paul ; Hoetzel, Janis ; Maurer, Lisa-Marie ; Fröhlich, Philipp ; Weiler, Sigrid ; Muller, Yves A. ; Koeppl, Heinz ; Suess, Beatrix (2024)
A novel RNA aptamer as synthetic inducer of DasR controlled transcription.
In: ACS synthetic biology, 13 (1)
doi: 10.1021/acssynbio.3c00553
Artikel, Bibliographie

Adamy, Jürgen ; Nuber, Ulrike A. ; Koeppl, Heinz ; Bretthauer, Georg (2024)
Biological engineering – an engineering discipline crucial to the future of our civilization.
In: at - Automatisierungstechnik, 72 (7)
doi: 10.1515/auto-2024-0061
Artikel, Bibliographie

Tahir, Anam ; Alt, Bastian ; Rizk, Amr ; Koeppl, Heinz (2023)
Load Balancing in Compute Clusters with Delayed Feedback.
In: IEEE Transactions on Computers, 72 (6)
doi: 10.1109/TC.2022.3215907
Artikel, Bibliographie

Engelmann, Nicolai ; Schwarz, Tobias ; Kubaczka, Erik ; Hochberger, Christian ; Koeppl, Heinz (2023)
Context-Aware Technology Mapping in Genetic Design Automation.
In: ACS Synthetic Biology, 12 (2)
doi: 10.1021/acssynbio.2c00361
Artikel, Bibliographie

Fabian, C. ; Cui, K. ; Koeppl, H. (2023)
Mean Field Games on Weighted and Directed Graphs via Colored Digraphons.
In: IEEE Control Systems Letters, 7
doi: 10.1109/LCSYS.2022.3227453
Artikel, Bibliographie

Cui, Kai ; KhudaBukhsh, Wasiur R. ; Koeppl, Heinz (2022)
Hypergraphon mean field games.
In: Chaos: An Interdisciplinary Journal of Nonlinear Science, 32 (11)
doi: 10.1063/5.0093758
Artikel, Bibliographie

Weber, Wadim ; Roeder, Markus ; Probanowski, Tobias ; Yang, Jie ; Abujubara, Helal ; Koeppl, Heinz ; Tietze, Alesia ; Stein, Viktor (2022)
Functional Nanopore Screen: A Versatile High-Throughput Assay to Study and Engineer Protein Nanopores in Escherichia coli.
In: ACS synthetic biology, 11 (6)
doi: 10.1021/acssynbio.1c00635
Artikel, Bibliographie

Köhs, Lukas ; Kukovetz, Kerri ; Rauh, Oliver ; Koeppl, Heinz (2022)
Nonparametric Bayesian inference for meta-stable conformational dynamics.
In: Physical Biology, 19 (5)
doi: 10.1088/1478-3975/ac885e
Artikel, Bibliographie

Ion, Ion Gabriel ; Wildner, C. ; Loukrezis, D. ; Koeppl, H. ; De Gersem, H. (2021)
Tensor-train approximation of the chemical master equation and its application for parameter inference.
In: The Journal of Chemical Physics, 155 (3)
doi: 10.1063/5.0045521
Artikel, Bibliographie

Kar, Sounak ; Rehrmann, Robin ; Mukhopadhyay, Arpan ; Alt, Bastian ; Ciucu, Florin ; Koeppl, Heinz ; Binnig, Carsten ; Rizk, Amr (2020)
On the Throughput Optimization in Large-scale Batch-processing Systems.
In: Performance Evaluation, 144
doi: 10.1016/j.peva.2020.102142
Artikel, Bibliographie

Benenson, Yaakov ; Dalchau, Neil ; Koeppl, Heinz ; Maler, Oded (2018)
Formal Methods for the Synthesis of Biomolecular Circuits.
In: Dagstuhl Reports, 8 (2)
doi: 10.4230/DagRep.8.2.88
Artikel, Bibliographie

Hill, Steven M. ; Heiser, Laura M. ; Cokelaer, Thomas ; Unger, Michael ; Nesser, Nicole K. ; Carlin, Daniel E. ; Zhang, Yang ; Sokolov, Artem ; Paull, Evan O. ; Wong, Chris K. ; Graim, Kiley ; Bivol, Adrian ; Wang, Haizhou ; Zhu, Fan ; Afsari, Bahman ; Danilova, Ludmila V. ; Favorov, Alexander V. ; Lee, Wai Shing ; Taylor, Dane ; Hu, Chenyue W. ; Long, Byron L. ; Noren, David P. ; Bisberg, Alexander J. ; Mills, Gordon B. ; Gray, Joe W. ; Kellen, Michael ; Norman, Thea ; Friend, Stephen ; Qutub, Amina A. ; Fertig, Elana J. ; Guan, Yuanfang ; Song, Mingzhou ; Stuart, Joshua M. ; Spellman, Paul T. ; Koeppl, Heinz ; Stolovitzky, Gustavo ; Saez-Rodriguez, Julio ; Mukherjee, Sach (2016)
Inferring causal molecular networks: empirical assessment through a community-based effort.
In: Nature Methods, 13 (4)
doi: 10.1038/nmeth.3773
Artikel, Bibliographie

Sulaimanov, Nurgazy ; Koeppl, Heinz (2016)
Graph reconstruction using covariance-based methods.
In: EURASIP Journal on Bioinformatics and Systems Biology
doi: 10.1186/s13637-016-0052-y
Artikel, Bibliographie

Danos, Vincent ; Koeppl, Heinz (2016)
Self-assembly and Self-organization in Computer Science and Biology.
In: Dagstuhl Reports, 5 (9)
doi: 10.4230/DagRep.5.9.125
Artikel, Bibliographie

Sharifian, Hoda ; Lampert, Fabienne ; Stojanovski, Klement ; Regot, Sergi ; Vaga, Stefania ; Buser, Raymond ; Lee, Sung Sik ; Koeppl, Heinz ; Posas, Francesc ; Pelet, Serge ; Peter, Matthias (2015)
Parallel feedback loops control the basal activity of the HOG MAPK signaling cascade.
In: Integrative Biology, 7 (4)
doi: 10.1039/c4ib00299g
Artikel, Bibliographie

Konferenzveröffentlichung

Sreedhara, Akash Kopparam ; Padala, Deepesh ; Mahesh, Shashank ; Cui, Kai ; Li, Mengguang ; Koeppl, Heinz (2024)
Optimal Collaborative Transportation for Under-Capacitated Vehicle Routing Problems using Aerial Drone Swarms.
2024 IEEE International Conference on Robotics and Automation. Yokohama, Japan (13.05.2024-17.05.2024)
doi: 10.1109/ICRA57147.2024.10611698
Konferenzveröffentlichung, Bibliographie

Fabian, Christian ; Cui, Kai ; Koeppl, Heinz (2024)
Learning Mean Field Games on Sparse Graphs: A Hybrid Graphex Approach.
12th International Conference on Learning Representations (ICLR 2024). Vienna, Austria (07.05.2024 - 11.05.2024)
Konferenzveröffentlichung, Bibliographie

Cui, Kai ; Hauck, Sascha ; Fabian, Christian ; Koeppl, Heinz (2024)
Learning Decentralized Partially Observable Mean Field Control for Artificial Collective Behavior.
12th International Conference on Learning Representations (ICLR 2024). Vienna, Austria (07.05.2024 - 11.05.2024)
Konferenzveröffentlichung, Bibliographie

Cui, Kai ; Dayanikli, Gökce ; Laurière, Mathieu ; Geist, Matthieu ; Pietquin, Oliver ; Koeppl, Heinz (2024)
Learning Discrete-Time Major-Minor Mean Field Games.
38th AAAI Conference on Artificial Intelligence. Vancouver, Canada (20.02.2024 - 27.02.2024)
doi: 10.1609/aaai.v38i9.28818
Konferenzveröffentlichung, Bibliographie

Eich, Yannick ; Alt, Bastian ; Koeppl, Heinz (2024)
Approximate Control for Continuous-Time POMDPs.
27th International Conference on Artificial Intelligence and Statistics. Valencia, Spain (02.05.2024 - 04.05.2024)
Konferenzveröffentlichung, Bibliographie

Reich, Christoph ; Prangemeier, Tim ; Koeppl, Heinz (2023)
The TYC Dataset for Understanding Instance-Level Semantics and Motions of Cells in Microstructures.
International Conference on Computer Vision (ICCV 2023). Paris, France (02.-06.10.2023)
doi: 10.1109/ICCVW60793.2023.00426
Konferenzveröffentlichung, Bibliographie

Cui, Kai ; Baumgärtner, Lars ; Yilmaz, Mustafa Burak ; Li, Mengguang ; Fabian, Christian ; Becker, Benjamin ; Xiang, Lin ; Bauer, Maximilian ; Koeppl, Heinz (2023)
UAV Swarms for Joint Data Ferrying and Dynamic Cell Coverage via Optimal Transport Descent and Quadratic Assignment.
48th Conference on Local Computer Networks. Daytona Beach, USA (02.10.2023 - 05.10.2023)
doi: 10.1109/LCN58197.2023.10223388
Konferenzveröffentlichung, Bibliographie

Weil, Jannis ; Alkhalili, Yassin ; Tahir, Anam ; Gruczyk, Thomas ; Meuser, Tobias ; Mu, Mu ; Koeppl, Heinz ; Mauthe, Andreas (2023)
Modeling Quality of Experience for Compressed Point Cloud Sequences based on a Subjective Study.
15th International Conference on Quality of Multimedia Experience. Ghent, Belgium (20.06.2023-22.06.2023)
doi: 10.1109/QoMEX58391.2023.10178579
Konferenzveröffentlichung, Bibliographie

Cui, K. ; Li, M. ; Fabian, C. ; Koeppl, H. (2023)
Scalable Task-Driven Robotic Swarm Control via Collision Avoidance and Learning Mean-Field Control.
40th IEEE International Conference on Robotics and Automation (ICRA2023). London, United Kingdom (29.05.2023 - 02.06.2023)
doi: 10.1109/ICRA48891.2023.10161498
Konferenzveröffentlichung, Bibliographie

Tahir, A. ; Cui, K. ; Koeppl, H. (2023)
Learning Mean-Field Control for Delayed Information Load Balancing in Large Queuing Systems.
51st International Conference on Parallel Processing. Bordeaux, France (29.08.2022 - 01.09.2022)
doi: 10.1145/3545008.3545025
Konferenzveröffentlichung, Bibliographie

Fabian, Christian ; Cui, Kai ; Koeppl, Heinz
Hrsg.: Ruiz, Francisco ; Dy, Jennifer ; van de Meent, Jan-Willem (2023)
Learning Sparse Graphon Mean Field Games.
26th International Conference on Artificial Intelligence and Statistics. Valencia, Spain (25.04.2023 - 27.04.2023)
Konferenzveröffentlichung, Bibliographie

Cetin, Ozdemir ; Chen, Mingzhi ; Ziegler, Paul ; Wild, Peter ; Koeppl, Heinz (2022)
Deep learning-based restaining of histopathological images.
International Conference on Bioinformatics and Biomedicine (BIBM 2022). Las Vegas, USA (06.-08.12.2022)
doi: 10.1109/BIBM55620.2022.9994934
Konferenzveröffentlichung, Bibliographie

Engelmann, Nicolai ; Koeppl, Heinz (2022)
Forward-Backward Latent State Inference for Hidden Continuous-Time semi-Markov Chains.
36th Conference on Neural Information Processing Systems (NeurIPS 2022). New Orleans, USA (28.11.-09.12.2022)
Konferenzveröffentlichung, Bibliographie

Schultheis, Matthias ; Rothkopf, Constantin A. ; Koeppl, Heinz (2022)
Reinforcement Learning with Non-Exponential Discounting.
36th Conference on Neural Information Processing Systems (NeurIPS 2022). New Orleans, USA (28.11.-09.12.2022)
Konferenzveröffentlichung, Bibliographie

Cui, K. ; Yilmaz, M. B. ; Tahir, A. ; Klein, A. ; Koeppl, H. (2022)
Optimal Offloading Strategies for Edge-Computing via Mean-Field Games and Control.
Rio de Janeiro, Brazil
doi: 10.1109/GLOBECOM48099.2022.10001412
Konferenzveröffentlichung, Bibliographie

Jia, Jiekai ; Tahir, Anam ; Koeppl, Heinz (2022)
Decentralized Coordination in Partially Observable Queueing Networks.
GLOBECOM 2022 - 2022 IEEE Global Communications Conference. Rio de Janeiro (04.12.2022-08.12.2022)
doi: 10.1109/GLOBECOM48099.2022.10001584
Konferenzveröffentlichung, Bibliographie

Dissertation

Sinzger-D'Angelo, Mark (2024)
Chemical reaction networks in random environments.
Technische Universität Darmstadt
doi: 10.26083/tuprints-00028086
Dissertation, Erstveröffentlichung, Verlagsversion

Cui, Kai (2024)
Large-Scale Multi-Agent Reinforcement Learning via Mean Field Games.
Technische Universität Darmstadt
doi: 10.26083/tuprints-00028568
Dissertation, Erstveröffentlichung, Verlagsversion

Tahir, Anam (2024)
Scalable Planning in Large Multi-Agent Queuing Systems.
Technische Universität Darmstadt
doi: 10.26083/tuprints-00027525
Dissertation, Erstveröffentlichung, Verlagsversion

Köhs, Lukas (2023)
Bayesian inference and learning in switching biological systems.
Technische Universität Darmstadt
doi: 10.26083/tuprints-00023022
Dissertation, Erstveröffentlichung, Verlagsversion