Heras Ciechomski, P. de ; Klann, M. ; Mange, R. ; Koeppl, H. (2013)
From biochemical reaction networks to 3D dynamics in the cell: The ZigCell3D modeling, simulation and visualisation framework.
2013 IEEE Symposium on Biological Data Visualization (BioVis). Atlanta, USA (13.10.2013-14.10.2013)
doi: 10.1109/BioVis.2013.6664345
Konferenzveröffentlichung, Bibliographie

Klann, M. ; Koeppl, H. (2013)
Reaction schemes, escape times and geminate recombinations in particle-based spatial simulations of biochemical reactions.
In: Physical biology, 10 (4)
Artikel, Bibliographie

Klann, M. ; Paulevé, L. ; Petrov, T. ; Koeppl, H. (2013)
Coarse-Grained Brownian Dynamics Simulation of Rule-Based Models.
11th International Conference on Computational Methods in Systems Biology (CMSB 2013).
Konferenzveröffentlichung, Bibliographie

Klann, M. ; Ganguly, A. ; Koeppl, H. (2012)
Hybrid spatial Gillespie and particle tracking simulation.
In: Bioinformatics (Oxford, England), 28 (18)
Artikel, Bibliographie

Hiroi, N. ; Klann, M. ; Iba, K. ; Heras Ciechomski, P. de ; Yamashita, S. ; Tabira, A. ; Okuhara, T. ; Kubojima, T. ; Okada, Y. ; Oka, K. ; Mange, R. ; Unger, M. ; Funahashi, A. ; Koeppl, H. (2012)
From microscopy data to in silico environments for in vivo-oriented simulations.
In: EURASIP Journal on Bioinformatics and Systems Biology, 2012 (1)
doi: 10.1186/1687-4153-2012-7
Artikel, Bibliographie

Klann, M. ; Koeppl, H. ; Reuss, M. (2012)
Spatial modeling of vesicle transport and the cytoskeleton: the challenge of hitting the right road.
In: PloS one, 7 (1)
Artikel, Bibliographie

Klann, M. ; Koeppl, H. (2012)
Spatial simulations in systems biology: from molecules to cells.
In: International journal of molecular sciences, 13 (6)
Artikel, Bibliographie

Klann, M. ; Koeppl, H. (2012)
Spatial stochastic simulation of transcription factor binding reveals mechaniscms to control gene activation.
9th International Workshop on Computational Systems Biology (WCSB 2012).
Konferenzveröffentlichung, Bibliographie

Klann, M. ; Ganguly, A. ; Koeppl, H. (2011)
Improved Reaction Scheme for Spatial Stochastic Simulations with Single Molecule Detail.
Eighth International Workshop on Computational Systems Biology (WCSB 2011).
Konferenzveröffentlichung, Bibliographie

Falk, M. ; Ott, M. ; Ertl, T. ; Klann, M. ; Koeppl, H. (2011)
Parallelized Agent-based Simulation on CPU and Graphics Hardware for Spatial and Stochastic Models in Biology Categories and Subject Descriptors.
Konferenzveröffentlichung, Bibliographie