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**14**.

## Article

**Geiger, B. C. and Petrov, T. and Kubin, G. and Koeppl, H.** (2015):

*Optimal Kullback-Leibler Aggregation via Information Bottleneck.*

In: IEEE Transactions on Automatic Control, 60 (4), pp. 1010-1022. IEEE, ISSN 0018-9286,

[Article]

**Ganguly, A. and Petrov, T. and Koeppl, H.** (2013):

*Markov chain aggregation and its applications to combinatorial reaction networks.*

In: Journal of mathematical biology, 69 (3), pp. 767-797. [Article]

**Feret, J. and Koeppl, H. and Petrov, T.** (2013):

*Stochastic fragments: A framework for the exact reduction of the stochastic semantics of rule-based models.*

In: International Journal of Software and Informatics, 7 (4), pp. 527-604. [Article]

**Petrov, T. and Ganguly, A. and Koeppl, H.** (2012):

*Model Decomposition and Stochastic Fragments.*

In: Electronic Notes in Theoretical Computer Science, 284, pp. 105-124. [Article]

**Feret, J. and Henzinger, T. and Koeppl, H. and Petrov, T.** (2012):

*Lumpability Abstractions of Rule-based Systems.*

In: Journal of Theoretical Comuter Science, 431, pp. 137-164. [Article]

**Koeppl, H. and Petrov, T.** (2011):

*Stochastic Semantics of Signaling as a Composition of Agent-view Automata.*

In: Electronic Notes in Theoretical Computer Science, 272, pp. 3-17. [Article]

**Camporesi, F. and Feret, J. and Koeppl, H. and Petrov, T.** (2010):

*Combining Model Reductions.*

In: Electronic Notes in Theoretical Computer Science, 265, pp. 73-96. [Article]

**Koeppl, H. and Setti, G. and Pelet, S. and Mangia, M. and Petrov, T. and Peter, M.** (2010):

*Probability metrics to calibrate stochastic chemical kinetics.*

In: Circuits and Systems (ISCAS), Proceedings of 2010 IEEE International Symposium on, [Article]

## Book Section

**Hafner, M. and Lu, J. and Petrov, T. and Koeppl, H.** (2011):

*Rational design of robust biomolecular circuits: From specification to parameters.*

In: Analysis and Design of Biomolecular Circuits, pp. 253-281, New York, NY, Springer, [Book Section]

## Conference or Workshop Item

**Koeppl, H. and Petrov, T.** (2013):

*Approximate model reductions for combinatorial reaction systems; European Control Conferenc (ECC 2013).*

pp. 4172-4177, European Control Conferenc (ECC 2013), Zuerich, 17-19 July 2013, [Conference or Workshop Item]

**Klann, M. and Paulevé, L. and Petrov, T. and Koeppl, H.** (2013):

*Coarse-Grained Brownian Dynamics Simulation of Rule-Based Models.*

8130, pp. 64-77, Springer Berlin Heidelberg, 11th International Conference on Computational Methods in Systems Biology (CMSB 2013), [Conference or Workshop Item]

**Petrov, T. and Feret, J. and Koeppl, H.** (2012):

*Reconstructing species-based dynamics from reduced stochastic rule-based models.*

p. 15, ACM, 2012 Winter Simulation Conference (WSC'12), Berlin, Germany, 09.-12.12., [Conference or Workshop Item]

**Koeppl, H. and Petrov, T.** (2012):

*Reductions of stochastic rule-based models: HOG pathway in yeast.*

ICSB : The 13th International Conference on Systems Biology, [Conference or Workshop Item]

**Petrov, T. and Koeppl, H.** (2010):

*Maximal reduction of deterministic semantics of rule-based models - Google-Suche.*

pp. 83-87, Proceedings of the International Workshop on computational Systems Biology (WCSB) in 2010, [Conference or Workshop Item]