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Self-assembly and Self-organization in Computer Science and Biology

Danos, Vincent ; Koeppl, Heinz (2024)
Self-assembly and Self-organization in Computer Science and Biology.
In: Dagstuhl Reports, 2016, 5 (9)
doi: 10.26083/tuprints-00026922
Artikel, Zweitveröffentlichung, Verlagsversion

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Kurzbeschreibung (Abstract)

This report documents the program and the outcomes of Dagstuhl Seminar 15402 "Self-assembly and Self-organization in Computer Science and Biology". With the trend of technological systems to become more distributed they tend to resemble closer biological systems. Biological systems on all scale are distributed and most often operate without central coordination. Taking the morphogenesis as an example, it is clear that the complexity and precision of distributed mechanisms in biology supersedes our current design attempts to distributed systems. The seminar assembled together researchers from computer science, engineering, physics and molecular biology working on the problem of decentralized coordination of distributed systems. Within every domain different terms have been coined, different analysis methods have been developed and applied and the seminar aims to foster the exchange of methods and the instantiation and alignment of important problem statements that can span across the disciplines. A representative example for a problem that is studied across domains through different methods is self-assembly. For example, computer scientists consider abstract self-assembly models such as Wang tiles to bound shape complexities while polymer physicists and biologists use molecular dynamics simulations to characterize self-assembly by means of energy and entropy. Because of its well-definedness, we deliberately placed emphasis on self-assembly that is otherwise entailed in the more general term self-organization. Within the domain of self-organization various research threads were represented at the seminar and a certain convergence of underlying concepts was possible. The seminar helped to exchange techniques from different domains and to agree on certain problem statements for future collaborations.

Typ des Eintrags: Artikel
Erschienen: 2024
Autor(en): Danos, Vincent ; Koeppl, Heinz
Art des Eintrags: Zweitveröffentlichung
Titel: Self-assembly and Self-organization in Computer Science and Biology
Sprache: Deutsch
Publikationsjahr: 30 April 2024
Ort: Darmstadt
Publikationsdatum der Erstveröffentlichung: 2016
Ort der Erstveröffentlichung: Wadern
Verlag: Schloss Dagstuhl
Titel der Zeitschrift, Zeitung oder Schriftenreihe: Dagstuhl Reports
Jahrgang/Volume einer Zeitschrift: 5
(Heft-)Nummer: 9
Veranstaltungstitel: Dagstuhl Seminar
Veranstaltungsort: Dagstuhl, Wadern
Veranstaltungsdatum: 27.09. - 02.10.2015
DOI: 10.26083/tuprints-00026922
URL / URN: https://tuprints.ulb.tu-darmstadt.de/26922
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Herkunft: Zweitveröffentlichungsservice
Kurzbeschreibung (Abstract):

This report documents the program and the outcomes of Dagstuhl Seminar 15402 "Self-assembly and Self-organization in Computer Science and Biology". With the trend of technological systems to become more distributed they tend to resemble closer biological systems. Biological systems on all scale are distributed and most often operate without central coordination. Taking the morphogenesis as an example, it is clear that the complexity and precision of distributed mechanisms in biology supersedes our current design attempts to distributed systems. The seminar assembled together researchers from computer science, engineering, physics and molecular biology working on the problem of decentralized coordination of distributed systems. Within every domain different terms have been coined, different analysis methods have been developed and applied and the seminar aims to foster the exchange of methods and the instantiation and alignment of important problem statements that can span across the disciplines. A representative example for a problem that is studied across domains through different methods is self-assembly. For example, computer scientists consider abstract self-assembly models such as Wang tiles to bound shape complexities while polymer physicists and biologists use molecular dynamics simulations to characterize self-assembly by means of energy and entropy. Because of its well-definedness, we deliberately placed emphasis on self-assembly that is otherwise entailed in the more general term self-organization. Within the domain of self-organization various research threads were represented at the seminar and a certain convergence of underlying concepts was possible. The seminar helped to exchange techniques from different domains and to agree on certain problem statements for future collaborations.

Freie Schlagworte: Self-assembly, molecular modeling, molecular dynamics, graph-rewriting grammars, self-organization, self-* systems, concurrency
ID-Nummer: Seminar-ID: 15402
Status: Verlagsversion
URN: urn:nbn:de:tuda-tuprints-269225
Sachgruppe der Dewey Dezimalklassifikatin (DDC): 000 Allgemeines, Informatik, Informationswissenschaft > 004 Informatik
500 Naturwissenschaften und Mathematik > 570 Biowissenschaften, Biologie
600 Technik, Medizin, angewandte Wissenschaften > 621.3 Elektrotechnik, Elektronik
Fachbereich(e)/-gebiet(e): 18 Fachbereich Elektrotechnik und Informationstechnik
18 Fachbereich Elektrotechnik und Informationstechnik > Institut für Nachrichtentechnik > Bioinspirierte Kommunikationssysteme
18 Fachbereich Elektrotechnik und Informationstechnik > Institut für Nachrichtentechnik
18 Fachbereich Elektrotechnik und Informationstechnik > Self-Organizing Systems Lab
Hinterlegungsdatum: 30 Apr 2024 09:22
Letzte Änderung: 09 Jul 2024 10:15
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