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Mechanistic insights into an engineered riboswitch: a switching element which confers riboswitch activity.

Weigand, Julia E. ; Schmidtke, S. R. ; Will, T. J. ; Duchardt-Ferner, E. ; Hammann, Christian ; Wöhnert, J. ; Suess, Beatrix (2011)
Mechanistic insights into an engineered riboswitch: a switching element which confers riboswitch activity.
In: Nucleic acids research, 39 (8)
Artikel, Bibliographie

Kurzbeschreibung (Abstract)

While many different RNA aptamers have been identified that bind to a plethora of small molecules only very few are capable of acting as engineered riboswitches. Even for aptamers binding the same ligand large differences in their regulatory potential were observed. We address here the molecular basis for these differences by using a set of unrelated neomycin-binding aptamers. UV melting analyses showed that regulating aptamers are thermally stabilized to a significantly higher degree upon ligand binding than inactive ones. Regulating aptamers show high ligand-binding affinity in the low nanomolar range which is necessary but not sufficient for regulation. NMR data showed that a destabilized, open ground state accompanied by extensive structural changes upon ligand binding is important for regulation. In contrast, inactive aptamers are already pre-formed in the absence of the ligand. By a combination of genetic, biochemical and structural analyses, we identified a switching element responsible for destabilizing the ligand free state without compromising the bound form. Our results explain for the first time the molecular mechanism of an engineered riboswitch.

Typ des Eintrags: Artikel
Erschienen: 2011
Autor(en): Weigand, Julia E. ; Schmidtke, S. R. ; Will, T. J. ; Duchardt-Ferner, E. ; Hammann, Christian ; Wöhnert, J. ; Suess, Beatrix
Art des Eintrags: Bibliographie
Titel: Mechanistic insights into an engineered riboswitch: a switching element which confers riboswitch activity.
Sprache: Englisch
Publikationsjahr: April 2011
Titel der Zeitschrift, Zeitung oder Schriftenreihe: Nucleic acids research
Jahrgang/Volume einer Zeitschrift: 39
(Heft-)Nummer: 8
Kurzbeschreibung (Abstract):

While many different RNA aptamers have been identified that bind to a plethora of small molecules only very few are capable of acting as engineered riboswitches. Even for aptamers binding the same ligand large differences in their regulatory potential were observed. We address here the molecular basis for these differences by using a set of unrelated neomycin-binding aptamers. UV melting analyses showed that regulating aptamers are thermally stabilized to a significantly higher degree upon ligand binding than inactive ones. Regulating aptamers show high ligand-binding affinity in the low nanomolar range which is necessary but not sufficient for regulation. NMR data showed that a destabilized, open ground state accompanied by extensive structural changes upon ligand binding is important for regulation. In contrast, inactive aptamers are already pre-formed in the absence of the ligand. By a combination of genetic, biochemical and structural analyses, we identified a switching element responsible for destabilizing the ligand free state without compromising the bound form. Our results explain for the first time the molecular mechanism of an engineered riboswitch.

Fachbereich(e)/-gebiet(e): 10 Fachbereich Biologie
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10 Fachbereich Biologie > Regulatorische RNAs und Ribozyme
10 Fachbereich Biologie > Synthetic Genetic Circuits (2020 umbenannt in "Synthetic RNA biology")
10 Fachbereich Biologie > RNA Biochemie
Hinterlegungsdatum: 25 Jan 2011 07:21
Letzte Änderung: 06 Nov 2020 07:04
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